It sounds like you are having issues with your TCI.
It could be wet.
Try removing it and drying it out.
You have to remove the TCI, open it up, and dry it in the oven at 180* for about 1/2 hour.
When you replace it, move it on top of the air box to avoid similar issues in the future.
Wouldn't hurt to use contact cleaner and dielectric grease on the connectors while you are at it.
Mine was very easy....but I had the faring off at the time...it just "flipped over".
you may have to clip the mounting tabs off so the false tank cover will fit back on properly