1 the motorcycle has the air ride controller but no wires going to it and I didn’t see a pump did all of the ventures come with air ride?
The controller should have a multi plug connector to the under side of it, it might be buried inside the faring. The controller looks like it is need of replacement as well. The pump is under the top case and by the looks of the condition of the rest of the bike I would suggest to overhaul it (clean it inside and out) or just go with replacing it with individual shraeder valves.
2 the clutch needs the fluid changed badly, is there anything special I need to do to bleed it?
Just be careful not to let any air in the system, it can be a bugger to get out again. On the other hand I would suggest to take off the cylinders, master and slave to thoroughly clean them. Would safe a big headache down the road. While you are at it, do the same for the brakes.
3 cruise is not working open to suggestions on where I should start for that?
Maybe a fuse, switch in the clutch or brake handle or foot brake switch.
4 coolant leak— the owner before me laid the motorcycle over twice and the crash bar cracked the tube going to the water pump, so how do I find part numbers and parts for these bikes?
https://www.yamahasportsplaza.com/oemparts/c/yamaha_motorcycle/parts
Or
Check out pinwall but don't go to Bikebandit, they are out of business.
5 brakes— the front brake works great but the sight glass is broken— rear brakes don’t work the best so I will bleed them is there anything special I need to do to bleed it?
As mentioned, I would take both cylinder off and clean them first, then refill with fresh fluid.